Now showing items 1-3 of 3

    • GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies 

      Kim, Jeremie S.; Senol Cali, Damla; Xin, Hongyi; Lee, Donghyuk; Ghose, Saugata; Alser, Mohammed; Hassan, Hasan; Ergin, Oğuz; Alkan, Can; Mutlu, Onur (BioMed Central Ltd., 2018-05-09)
      Background: Seed location filtering is critical in DNA read mapping, a process where billions of DNA fragments (reads) sampled from a donor are mapped onto a reference genome to identify genomic variants of the donor. ...
    • SoftMC: A Flexible and Practical Open-Source Infrastructure for Enabling Experimental DRAM Studies 

      Hassan, Hasan; Vijaykumar, Nandita; Khan, Samira; Ghose, Saugata; Chang, Kevin; Pekhimenko, Gennady; Lee, Donghyuk; Ergin, Oğuz; Mutlu, Onur (IEEE, 2017)
      DRAM is the primary technology used for main memory in modern systems. Unfortunately, as DRAM scales down to smaller technology nodes, it faces key challenges in both data integrity and latency, which strongly affects ...
    • SoftMC: Practical DRAM Characterization Using an FPGA-Based Infrastructure 

      Hassan, Hasan; Vijaykumar, Nandita; Khan, Samira; Ghose, Saugata; Chang, Kevin; Pekhimenko, Gennady; Lee, Donghyuk; Ergin, Oğuz; Mutlu, Onur (IPSI Belgrade ltd., 2018-07)
      This paper summarizes the SoftMC DRAM characterization infrastructure, which was published in HPCA 2017 [44], and examines the work's significance and future potential. DRAM is the primary technology used for main memory ...